Variant report

Variant	rs72994607
Chromosome Location	chr11:119813191-119813192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34955847	1.00[AFR][1000 genomes]
rs35962410	1.00[AFR][1000 genomes]
rs56031122	1.00[AFR][1000 genomes]
rs66921644	1.00[AFR][1000 genomes]
rs72994656	1.00[AFR][1000 genomes]
rs73010607	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119810000-119814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:119811200-119813200	Enhancers	Fetal Intestine Large	intestine
3	chr11:119811400-119815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:119811800-119813400	Enhancers	Fetal Intestine Small	intestine
5	chr11:119812000-119813200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:119812000-119813200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:119812200-119813200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:119812400-119813200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:119813000-119813200	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:119813000-119814800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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