Variant report

Variant	rs6696409
Chromosome Location	chr1:224291844-224291845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10737430	0.85[AFR][1000 genomes]
rs10753448	0.86[AFR][1000 genomes]
rs10753453	0.83[AFR][1000 genomes]
rs10916326	0.85[AFR][1000 genomes]
rs10916328	0.90[AFR][1000 genomes]
rs1586888	0.86[AFR][1000 genomes]
rs1602706	0.86[AFR][1000 genomes]
rs1810344	0.83[AFR][1000 genomes]
rs1891738	0.84[AFR][1000 genomes]
rs1891739	0.85[AFR][1000 genomes]
rs2035897	0.86[AFR][1000 genomes]
rs2404844	0.86[AFR][1000 genomes]
rs2404845	0.86[AFR][1000 genomes]
rs2404846	0.86[AFR][1000 genomes]
rs2404847	0.86[AFR][1000 genomes]
rs2896986	0.86[AFR][1000 genomes]
rs4353057	0.86[AFR][1000 genomes]
rs4653955	0.85[AFR][1000 genomes]
rs4653956	0.86[AFR][1000 genomes]
rs4653985	0.81[AFR][1000 genomes]
rs6426108	0.82[AFR][1000 genomes]
rs6426112	0.86[AFR][1000 genomes]
rs6426135	0.87[AFR][1000 genomes]
rs6659249	0.86[AFR][1000 genomes]
rs6671784	0.86[AFR][1000 genomes]
rs6687331	0.84[AFR][1000 genomes]
rs6702019	0.86[AFR][1000 genomes]
rs7526301	0.86[AFR][1000 genomes]
rs7535007	0.86[AFR][1000 genomes]
rs908796	0.86[AFR][1000 genomes]
rs937155	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv832692	chr1:224206536-224407717	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224289800-224294200	Weak transcription	K562	blood
2	chr1:224291600-224301600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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