Variant report

Variant	rs66965560
Chromosome Location	chr4:85961860-85961861
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11097028	0.85[EUR][1000 genomes]
rs11732309	0.82[EUR][1000 genomes]
rs11732347	0.82[EUR][1000 genomes]
rs12498787	0.82[EUR][1000 genomes]
rs12500519	0.82[EUR][1000 genomes]
rs12502559	0.84[EUR][1000 genomes]
rs12503330	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12640378	0.83[EUR][1000 genomes]
rs13118671	0.82[EUR][1000 genomes]
rs13125323	0.85[EUR][1000 genomes]
rs13139541	0.84[EUR][1000 genomes]
rs13141072	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1508670	0.82[EUR][1000 genomes]
rs17009317	0.80[EUR][1000 genomes]
rs17009334	0.82[EUR][1000 genomes]
rs34239067	0.83[EUR][1000 genomes]
rs35190829	0.81[EUR][1000 genomes]
rs35892581	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4383611	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4470615	0.84[EUR][1000 genomes]
rs4590017	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4626191	0.81[EUR][1000 genomes]
rs4634212	0.84[EUR][1000 genomes]
rs55871210	0.85[EUR][1000 genomes]
rs55912355	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56094216	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56194765	0.82[EUR][1000 genomes]
rs58074983	0.86[EUR][1000 genomes]
rs6531782	0.81[EUR][1000 genomes]
rs6531783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67624868	0.86[EUR][1000 genomes]
rs6815917	0.84[EUR][1000 genomes]
rs6820517	0.86[EUR][1000 genomes]
rs71631375	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72664928	0.81[EUR][1000 genomes]
rs72664957	0.83[EUR][1000 genomes]
rs7663580	0.82[EUR][1000 genomes]
rs7675324	0.82[EUR][1000 genomes]
rs7682896	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7690054	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7692223	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7695054	0.82[EUR][1000 genomes]
rs9790649	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv967300	chr4:85958253-85964140	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3516392	chr4:85960002-85964029	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3516393	chr4:85960002-85964029	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85959200-85962000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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