Variant report

Variant	rs72664928
Chromosome Location	chr4:85749016-85749017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11097028	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12500519	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12501525	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12502294	0.82[EUR][1000 genomes]
rs12502409	0.88[EUR][1000 genomes]
rs12502559	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12503330	0.83[EUR][1000 genomes]
rs13108722	0.81[EUR][1000 genomes]
rs13118671	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13125323	0.85[EUR][1000 genomes]
rs13139541	0.84[EUR][1000 genomes]
rs13141072	0.82[EUR][1000 genomes]
rs1484661	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1508670	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16995920	0.82[EUR][1000 genomes]
rs17009317	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17009334	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35190829	0.91[EUR][1000 genomes]
rs35892581	0.83[EUR][1000 genomes]
rs4383611	0.83[EUR][1000 genomes]
rs4590017	0.83[EUR][1000 genomes]
rs55871210	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55912355	0.80[EUR][1000 genomes]
rs56094216	0.84[EUR][1000 genomes]
rs58074983	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6531783	0.83[EUR][1000 genomes]
rs66965560	0.81[EUR][1000 genomes]
rs67624868	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6815917	0.86[EUR][1000 genomes]
rs6816534	0.83[EUR][1000 genomes]
rs6820517	0.86[EUR][1000 genomes]
rs6825852	0.82[EUR][1000 genomes]
rs6829807	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6838727	0.82[EUR][1000 genomes]
rs6847564	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72664957	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7682896	0.81[EUR][1000 genomes]
rs7690054	0.83[EUR][1000 genomes]
rs7692223	0.83[EUR][1000 genomes]
rs7695054	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
3	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:85705400-85770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:85708600-85777400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:85709000-85769600	Weak transcription	Right Ventricle	heart
7	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
8	chr4:85709200-85770200	Weak transcription	Psoas Muscle	Psoas
9	chr4:85722200-85787600	Weak transcription	Gastric	stomach
10	chr4:85722400-85751800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:85722400-85762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:85723000-85751200	Weak transcription	Fetal Heart	heart
13	chr4:85723000-85754800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
15	chr4:85723200-85749600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:85723200-85770400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:85723200-85777000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:85724000-85749400	Weak transcription	Fetal Intestine Small	intestine
19	chr4:85724000-85752000	Weak transcription	Fetal Stomach	stomach
20	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:85724200-85761600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:85724200-85769600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:85724600-85753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:85727800-85783200	Weak transcription	Colonic Mucosa	Colon
26	chr4:85729800-85755800	Weak transcription	Ovary	ovary
27	chr4:85730800-85760400	Weak transcription	Fetal Kidney	kidney
28	chr4:85731400-85749600	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:85731400-85751400	Weak transcription	Fetal Brain Female	brain
30	chr4:85731400-85769600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:85731400-85791600	Weak transcription	Lung	lung
32	chr4:85731800-85769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:85732800-85759000	Weak transcription	Brain Angular Gyrus	brain
34	chr4:85732800-85761200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:85733600-85753400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr4:85735800-85777000	Weak transcription	Aorta	Aorta
37	chr4:85736200-85751400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:85736400-85758800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:85736400-85769600	Weak transcription	A549	lung
40	chr4:85736400-85790600	Weak transcription	NHEK	skin
41	chr4:85738600-85761000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:85738800-85760400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:85739400-85777000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:85739800-85759000	Weak transcription	Brain Substantia Nigra	brain
45	chr4:85740400-85751200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:85740400-85756400	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:85740600-85749400	Weak transcription	NH-A	brain
48	chr4:85740600-85749600	Weak transcription	Fetal Lung	lung
49	chr4:85741200-85749800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:85741400-85751200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links