Variant report

Variant	rs6698725
Chromosome Location	chr1:209222870-209222871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2093788	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2104309	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6540499	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6666007	0.89[AMR][1000 genomes]
rs6677861	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6685963	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6689506	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6689873	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209213200-209224400	Weak transcription	Esophagus	oesophagus
2	chr1:209221000-209223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:209221400-209223200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:209221600-209223600	Enhancers	HSMM	muscle
5	chr1:209221800-209223000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:209221800-209223000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:209221800-209223000	Enhancers	NH-A	brain
8	chr1:209221800-209223000	Enhancers	Osteobl	bone
9	chr1:209221800-209225600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:209222000-209223000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:209222000-209223000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:209222000-209223000	Enhancers	NHDF-Ad	bronchial
13	chr1:209222000-209223600	Enhancers	HSMMtube	muscle
14	chr1:209222000-209223800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:209222000-209225000	Enhancers	NHEK	skin
16	chr1:209222000-209225800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:209222200-209223000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:209222400-209223000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr1:209222600-209223000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
20	chr1:209222600-209223400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:209222600-209224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:209222800-209223000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:209222800-209223200	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:209222800-209224400	Weak transcription	HMEC	breast

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