Variant report

Variant	rs2104309
Chromosome Location	chr1:209223431-209223432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218724	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10863749	0.80[ASN][1000 genomes]
rs12037144	0.82[EUR][1000 genomes]
rs12037818	0.84[EUR][1000 genomes]
rs17013951	0.82[EUR][1000 genomes]
rs17013955	0.82[EUR][1000 genomes]
rs2093788	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4644496	0.81[AFR][1000 genomes]
rs6540499	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6666007	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6677861	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6685963	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6689506	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689873	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698725	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209213200-209224400	Weak transcription	Esophagus	oesophagus
2	chr1:209221600-209223600	Enhancers	HSMM	muscle
3	chr1:209221800-209225600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:209222000-209223600	Enhancers	HSMMtube	muscle
5	chr1:209222000-209223800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:209222000-209225000	Enhancers	NHEK	skin
7	chr1:209222000-209225800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:209222600-209224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:209222800-209224400	Weak transcription	HMEC	breast
10	chr1:209223000-209232600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:209223200-209224200	Enhancers	Fetal Muscle Leg	muscle
12	chr1:209223400-209223800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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