Variant report

Variant	rs17013955
Chromosome Location	chr1:209212051-209212052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10218724	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863749	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12037144	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12037818	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17013951	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093788	0.80[EUR][1000 genomes]
rs2104309	0.82[EUR][1000 genomes]
rs6540499	0.80[EUR][1000 genomes]
rs6666007	0.81[EUR][1000 genomes]
rs6677861	0.80[EUR][1000 genomes]
rs6685963	0.84[EUR][1000 genomes]
rs6689506	0.82[EUR][1000 genomes]
rs6689873	0.82[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209209600-209218800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:209209800-209212800	Weak transcription	Esophagus	oesophagus
3	chr1:209210800-209213000	Enhancers	NHEK	skin
4	chr1:209210800-209214800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:209211200-209212200	Enhancers	GM12878-XiMat	blood
6	chr1:209211200-209213000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:209211200-209213000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:209211200-209213000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:209211200-209213200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:209211200-209214600	Enhancers	HMEC	breast
11	chr1:209211600-209212600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:209211600-209212800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:209211600-209212800	Enhancers	Hela-S3	cervix
14	chr1:209211600-209213000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:209211800-209212600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:209211800-209212800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:209211800-209212800	Weak transcription	Ovary	ovary
18	chr1:209212000-209212400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:209212000-209213200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:209212000-209214200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:209212000-209219200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links