Variant report

Variant	rs17013951
Chromosome Location	chr1:209211154-209211155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10218724	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863749	0.85[EUR][1000 genomes]
rs12037144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12037818	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013955	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093788	0.80[EUR][1000 genomes]
rs2104309	0.82[EUR][1000 genomes]
rs6540499	0.80[EUR][1000 genomes]
rs6666007	0.81[EUR][1000 genomes]
rs6677861	0.80[EUR][1000 genomes]
rs6685963	0.84[EUR][1000 genomes]
rs6689506	0.82[EUR][1000 genomes]
rs6689873	0.82[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209209400-209211200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:209209600-209218800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:209209800-209212800	Weak transcription	Esophagus	oesophagus
4	chr1:209210800-209211800	Enhancers	Ovary	ovary
5	chr1:209210800-209213000	Enhancers	NHEK	skin
6	chr1:209210800-209214800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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