Variant report

Variant	rs12037818
Chromosome Location	chr1:209209120-209209121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10218724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10863749	0.84[EUR][1000 genomes]
rs12037144	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17013951	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013955	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093788	0.81[EUR][1000 genomes]
rs2104309	0.84[EUR][1000 genomes]
rs6540499	0.81[EUR][1000 genomes]
rs6666007	0.83[EUR][1000 genomes]
rs6677861	0.81[EUR][1000 genomes]
rs6685963	0.85[EUR][1000 genomes]
rs6689506	0.84[EUR][1000 genomes]
rs6689873	0.84[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12037818	YOD1	cis	parietal	SCAN
rs12037818	CR1	cis	cerebellum	SCAN
rs12037818	SYT14	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209182800-209210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209208800-209209600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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