Variant report
| Variant | rs66999431 |
|---|---|
| Chromosome Location | chr6:54550165-54550166 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:54547491..54552528-chr6:54710025..54715322,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10484987 | 0.88[EUR][1000 genomes] |
| rs10484990 | 0.98[EUR][1000 genomes] |
| rs10484992 | 0.93[EUR][1000 genomes] |
| rs10948833 | 0.84[EUR][1000 genomes] |
| rs12192965 | 0.88[EUR][1000 genomes] |
| rs12194292 | 0.93[EUR][1000 genomes] |
| rs12194478 | 0.88[EUR][1000 genomes] |
| rs12205849 | 0.93[EUR][1000 genomes] |
| rs12206020 | 0.88[EUR][1000 genomes] |
| rs12208354 | 0.88[EUR][1000 genomes] |
| rs12208446 | 0.90[ASN][1000 genomes] |
| rs12211249 | 0.88[EUR][1000 genomes] |
| rs12213260 | 0.88[EUR][1000 genomes] |
| rs3907684 | 0.90[ASN][1000 genomes] |
| rs6906762 | 0.88[EUR][1000 genomes] |
| rs6923146 | 0.90[ASN][1000 genomes] |
| rs6930567 | 0.93[EUR][1000 genomes] |
| rs6934575 | 0.88[EUR][1000 genomes] |
| rs7739592 | 0.90[ASN][1000 genomes] |
| rs7743287 | 0.88[EUR][1000 genomes] |
| rs7774965 | 0.90[ASN][1000 genomes] |
| rs7775692 | 0.88[EUR][1000 genomes] |
| rs925056 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv1813954 | chr6:54518364-54557296 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
