Variant report

Variant	rs925056
Chromosome Location	chr6:54552021-54552022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54547491..54552528-chr6:54710025..54715322,6	MCF-7	breast:
2	chr6:54551257..54553977-chr6:54562035..54564580,2	MCF-7	breast:
3	chr6:54546361..54548104-chr6:54550298..54552036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10484987	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10484990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10948833	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192965	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12194292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194478	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196439	1.00[CEU][hapmap]
rs12198783	1.00[CHB][hapmap]
rs12205262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12205849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206020	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12208354	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209646	1.00[CHB][hapmap]
rs12211249	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12213260	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17545576	1.00[CHB][hapmap]
rs17545776	1.00[CHB][hapmap]
rs2047827	1.00[CHB][hapmap]
rs66999431	0.93[EUR][1000 genomes]
rs6906762	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6927382	0.81[AMR][1000 genomes]
rs6930567	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6934575	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7743287	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7773204	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs7775692	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9474993	1.00[CEU][hapmap]
rs9474994	1.00[CEU][hapmap]
rs9474998	1.00[CEU][hapmap]
rs9474999	1.00[CEU][hapmap]
rs9475000	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813136	chr6:54550530-54557193	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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