Variant report

Variant	rs7773204
Chromosome Location	chr6:54578433-54578434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54577953..54579734-chr6:54746271..54747974,2	MCF-7	breast:
2	chr6:54578251..54580318-chr6:54581650..54584206,2	MCF-7	breast:
3	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
4	chr6:54574954..54578587-chr6:54580352..54583856,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10484987	0.88[CEU][hapmap]
rs10484990	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10484992	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12194292	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12196439	0.88[CEU][hapmap]
rs12198783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12205262	1.00[CHB][hapmap]
rs12205849	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12209646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12213260	0.88[CEU][hapmap]
rs1503137	1.00[CHB][hapmap]
rs16886072	1.00[CHB][hapmap]
rs16886073	1.00[CHB][hapmap]
rs16886088	1.00[CHB][hapmap]
rs16886105	1.00[CHB][hapmap]
rs17545576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17545776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1910352	1.00[CHB][hapmap]
rs2047827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs239823	1.00[CHB][hapmap]
rs239824	1.00[CHB][hapmap]
rs239828	1.00[CHB][hapmap]
rs239829	1.00[CHB][hapmap]
rs239830	1.00[CHB][hapmap]
rs239831	1.00[CHB][hapmap]
rs239832	1.00[CHB][hapmap]
rs239833	1.00[CHB][hapmap]
rs239834	1.00[CHB][hapmap]
rs239836	1.00[CHB][hapmap]
rs239838	1.00[CHB][hapmap]
rs239839	1.00[CHB][hapmap]
rs239840	1.00[CHB][hapmap]
rs239841	1.00[CHB][hapmap]
rs239843	1.00[CHB][hapmap]
rs239846	1.00[CHB][hapmap]
rs239847	1.00[CHB][hapmap]
rs239848	1.00[CHB][hapmap]
rs239852	1.00[CHB][hapmap]
rs239853	1.00[CHB][hapmap]
rs41431945	1.00[CHB][hapmap]
rs6927382	0.80[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930567	0.89[ASN][1000 genomes]
rs7453441	1.00[CHB][hapmap]
rs7739951	1.00[CHB][hapmap]
rs7743188	1.00[CHB][hapmap]
rs925056	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs9349735	1.00[CHB][hapmap]
rs9367588	1.00[CHB][hapmap]
rs9367589	1.00[CHB][hapmap]
rs9367596	1.00[CHB][hapmap]
rs9370335	1.00[CHB][hapmap]
rs9382377	1.00[CHB][hapmap]
rs9382388	1.00[CHB][hapmap]
rs9395992	1.00[CHB][hapmap]
rs9474982	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474983	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474993	0.88[CEU][hapmap]
rs9474994	0.88[CEU][hapmap]
rs9474998	0.88[CEU][hapmap]
rs9475000	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54571400-54579800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:54575200-54579600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:54575600-54579600	Weak transcription	Stomach Mucosa	stomach
4	chr6:54575800-54580400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:54575800-54581800	Weak transcription	Fetal Lung	lung

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