Variant report

Variant	rs9474983
Chromosome Location	chr6:54601401-54601402
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10484990	0.83[ASN][1000 genomes]
rs10484992	0.89[ASN][1000 genomes]
rs12194292	0.83[ASN][1000 genomes]
rs12198783	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205849	0.83[ASN][1000 genomes]
rs12208446	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12209646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545576	0.80[ASN][1000 genomes]
rs17545776	0.80[ASN][1000 genomes]
rs3907684	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6923146	0.91[EUR][1000 genomes]
rs6927382	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6930567	0.89[ASN][1000 genomes]
rs7739592	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7773204	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7774965	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9474982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54600200-54612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54601400-54613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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