Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:54583583..54586469-chr6:54727325..54729845,2	MCF-7	breast:
2	chr6:54583465..54585924-chr6:54724133..54726618,2	MCF-7	breast:
3	chr6:54584974..54587110-chr6:54788503..54790985,2	MCF-7	breast:
4	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
5	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
6	chr6:54581970..54584648-chr6:54584800..54586441,2	MCF-7	breast:
7	chr6:54577593..54590845-chr6:54708062..54715554,67	MCF-7	breast:
8	chr6:54582713..54585752-chr6:54741876..54745709,4	MCF-7	breast:
9	chr6:54585158..54588149-chr6:54741239..54743201,2	MCF-7	breast:
10	chr6:54581587..54585941-chr6:54586924..54591451,7	MCF-7	breast:
11	chr6:54570566..54573467-chr6:54582462..54585489,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction
ENSG00000224984	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484990	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10484992	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12194292	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12205262	1.00[CHB][hapmap]
rs12205849	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12208446	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12209646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17545776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2047827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3907684	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6923146	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6927382	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6930567	0.89[ASN][1000 genomes]
rs7739592	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7773204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7774965	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs925056	1.00[CHB][hapmap]
rs9474982	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474983	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54583200-54585400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:54583600-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:54583800-54585800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:54583800-54586600	Weak transcription	NHEK	skin
5	chr6:54584000-54585800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:54584000-54586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:54584600-54586400	Weak transcription	HMEC	breast
8	chr6:54584600-54586600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:54585000-54585600	Enhancers	Fetal Brain Female	brain
10	chr6:54585200-54585400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:54585200-54587200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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