Variant report

Variant	rs12205262
Chromosome Location	chr6:54562545-54562546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54561752..54563922-chr6:54714449..54716896,3	MCF-7	breast:
2	chr6:54558970..54566519-chr6:54708534..54713743,16	MCF-7	breast:
3	chr6:54551257..54553977-chr6:54562035..54564580,2	MCF-7	breast:
4	chr6:54560120..54562700-chr6:54564068..54565878,2	MCF-7	breast:
5	chr6:54562484..54564963-chr6:54735331..54738094,2	MCF-7	breast:
6	chr6:54559522..54567174-chr6:54707552..54714330,37	MCF-7	breast:
7	chr6:54561977..54564257-chr6:54570191..54572297,2	MCF-7	breast:
8	chr6:54562310..54563986-chr6:54587468..54589771,2	MCF-7	breast:
9	chr6:54560857..54562671-chr6:54739251..54742148,2	MCF-7	breast:
10	chr6:54560989..54563870-chr6:54779771..54781666,2	MCF-7	breast:
11	chr6:54562300..54564099-chr6:54779694..54781853,2	MCF-7	breast:
12	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:
13	chr6:54562066..54563606-chr6:54702788..54705608,2	MCF-7	breast:
14	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10046281	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10484990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10484992	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12194292	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12198783	1.00[CHB][hapmap]
rs12205849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12209646	1.00[CHB][hapmap]
rs12212341	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17545576	1.00[CHB][hapmap]
rs17545776	1.00[CHB][hapmap]
rs2047827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72959492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743263	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7755218	0.80[EUR][1000 genomes]
rs7773204	1.00[CHB][hapmap]
rs925056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9474999	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54562400-54564200	Enhancers	NHEK	skin
2	chr6:54562400-54565400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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