Variant report

Variant	rs6927382
Chromosome Location	chr6:54576743-54576744
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484987	0.81[GIH][hapmap]
rs10484990	0.83[ASN][1000 genomes]
rs10484992	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12194292	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12198783	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12205849	0.87[GIH][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12209646	1.00[ASW][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17545576	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17545776	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2047827	1.00[JPT][hapmap]
rs6930567	0.89[ASN][1000 genomes]
rs7773204	0.80[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925056	0.81[AMR][1000 genomes]
rs9474982	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474983	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54571400-54579800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:54575200-54579600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:54575600-54579600	Weak transcription	Stomach Mucosa	stomach
4	chr6:54575800-54576800	Weak transcription	Fetal Heart	heart
5	chr6:54575800-54580400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:54575800-54581800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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