Variant report

Variant	rs9367589
Chromosome Location	chr6:54648963-54648964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54648395..54650437-chr6:54710257..54713518,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1503137	1.00[CHB][hapmap]
rs1503150	1.00[CHB][hapmap]
rs16886072	1.00[CHB][hapmap]
rs16886073	1.00[CHB][hapmap]
rs16886088	1.00[CHB][hapmap]
rs16886105	1.00[CHB][hapmap]
rs1910352	1.00[CHB][hapmap]
rs239787	1.00[CHB][hapmap]
rs239788	1.00[CHB][hapmap]
rs239789	1.00[CHB][hapmap]
rs239791	1.00[CHB][hapmap]
rs239793	1.00[CHB][hapmap]
rs239798	1.00[CHB][hapmap]
rs239802	1.00[CHB][hapmap]
rs239805	1.00[CHB][hapmap]
rs239823	1.00[CHB][hapmap]
rs239824	1.00[CHB][hapmap]
rs239828	1.00[CHB][hapmap]
rs239829	1.00[CHB][hapmap]
rs239830	1.00[CHB][hapmap]
rs239831	1.00[CHB][hapmap]
rs239832	1.00[CHB][hapmap]
rs239833	1.00[CHB][hapmap]
rs239834	1.00[CHB][hapmap]
rs239836	1.00[CHB][hapmap]
rs239838	1.00[CHB][hapmap]
rs239839	1.00[CHB][hapmap]
rs239840	1.00[CHB][hapmap]
rs239841	1.00[CHB][hapmap]
rs239843	1.00[CHB][hapmap]
rs239846	1.00[CHB][hapmap]
rs239847	1.00[CHB][hapmap]
rs239848	1.00[CHB][hapmap]
rs239852	1.00[CHB][hapmap]
rs239853	1.00[CHB][hapmap]
rs2746440	1.00[CHB][hapmap]
rs398483	1.00[CHB][hapmap]
rs406149	1.00[CHB][hapmap]
rs41431945	1.00[CHB][hapmap]
rs57567824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58082927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58880219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59257883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7453441	1.00[CHB][hapmap]
rs7739951	1.00[CHB][hapmap]
rs7743188	1.00[CHB][hapmap]
rs7773204	1.00[CHB][hapmap]
rs9349730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349735	1.00[CHB][hapmap]
rs9357817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357818	1.00[EUR][1000 genomes]
rs9367588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367596	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9370329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370335	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9382374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs9382393	0.83[AMR][1000 genomes]
rs9382394	0.83[AMR][1000 genomes]
rs9382395	0.83[AMR][1000 genomes]
rs9395992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396001	1.00[AMR][1000 genomes]
rs9475077	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54648400-54649000	Enhancers	Fetal Lung	lung
2	chr6:54648600-54649200	Enhancers	NHEK	skin
3	chr6:54648600-54649200	Active TSS	Osteobl	bone
4	chr6:54648800-54649000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:54648800-54649000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54648800-54649000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:54648800-54649000	Enhancers	Small Intestine	intestine
8	chr6:54648800-54649000	Enhancers	HMEC	breast
9	chr6:54648800-54649200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:54648800-54649200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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