Variant report

Variant	rs59257883
Chromosome Location	chr6:54610711-54610712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11962935	1.00[EUR][1000 genomes]
rs56798185	1.00[EUR][1000 genomes]
rs57567824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58082927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58880219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357818	1.00[EUR][1000 genomes]
rs9367588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367596	1.00[AMR][1000 genomes]
rs9370329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370335	1.00[AMR][1000 genomes]
rs9382374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382381	1.00[EUR][1000 genomes]
rs9382382	1.00[EUR][1000 genomes]
rs9382385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382388	1.00[AMR][1000 genomes]
rs9382393	0.83[AMR][1000 genomes]
rs9382394	0.83[AMR][1000 genomes]
rs9382395	0.83[AMR][1000 genomes]
rs9395992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9396001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54600200-54612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54601400-54613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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