Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54742187..54744014-chr6:54753985..54756805,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs57567824	0.83[AMR][1000 genomes]
rs58082927	0.83[AMR][1000 genomes]
rs59257883	0.83[AMR][1000 genomes]
rs9349730	0.83[AMR][1000 genomes]
rs9349738	1.00[EUR][1000 genomes]
rs9357817	0.83[AMR][1000 genomes]
rs9367588	0.83[AMR][1000 genomes]
rs9367589	0.83[AMR][1000 genomes]
rs9367590	0.83[AMR][1000 genomes]
rs9367592	0.83[AMR][1000 genomes]
rs9367596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370329	0.83[AMR][1000 genomes]
rs9370335	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382374	0.83[AMR][1000 genomes]
rs9382377	0.83[AMR][1000 genomes]
rs9382378	0.83[AMR][1000 genomes]
rs9382379	0.83[AMR][1000 genomes]
rs9382385	0.83[AMR][1000 genomes]
rs9382386	0.83[AMR][1000 genomes]
rs9382388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395992	0.83[AMR][1000 genomes]
rs9395993	0.83[AMR][1000 genomes]
rs9395994	0.83[AMR][1000 genomes]
rs9395998	0.83[AMR][1000 genomes]
rs9396001	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475058	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54739800-54763000	Weak transcription	Small Intestine	intestine
2	chr6:54744200-54757600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:54744400-54761000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:54746400-54757800	Weak transcription	Hela-S3	cervix
5	chr6:54752200-54759000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:54752400-54758600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:54755800-54757200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:54755800-54758000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:54755800-54758000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:54756000-54757200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:54756200-54757000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:54756200-54758400	Enhancers	HMEC	breast
13	chr6:54756600-54757000	Genic enhancers	NHEK	skin

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