Variant report

Variant	rs9357817
Chromosome Location	chr6:54666158-54666159
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1503137	1.00[CHB][hapmap]
rs1503150	1.00[CHB][hapmap]
rs16886072	1.00[CHB][hapmap]
rs16886073	1.00[CHB][hapmap]
rs16886088	1.00[CHB][hapmap]
rs16886105	1.00[CHB][hapmap]
rs1910352	1.00[CHB][hapmap]
rs239787	1.00[CHB][hapmap]
rs239788	1.00[CHB][hapmap]
rs239789	1.00[CHB][hapmap]
rs239791	1.00[CHB][hapmap]
rs239793	1.00[CHB][hapmap]
rs239798	1.00[CHB][hapmap]
rs239802	1.00[CHB][hapmap]
rs239805	1.00[CHB][hapmap]
rs239823	1.00[CHB][hapmap]
rs239824	1.00[CHB][hapmap]
rs239828	1.00[CHB][hapmap]
rs239829	1.00[CHB][hapmap]
rs239830	1.00[CHB][hapmap]
rs239831	1.00[CHB][hapmap]
rs239832	1.00[CHB][hapmap]
rs239833	1.00[CHB][hapmap]
rs239834	1.00[CHB][hapmap]
rs239836	1.00[CHB][hapmap]
rs239838	1.00[CHB][hapmap]
rs239839	1.00[CHB][hapmap]
rs239840	1.00[CHB][hapmap]
rs239841	1.00[CHB][hapmap]
rs239843	1.00[CHB][hapmap]
rs239846	1.00[CHB][hapmap]
rs239847	1.00[CHB][hapmap]
rs239848	1.00[CHB][hapmap]
rs239852	1.00[CHB][hapmap]
rs239853	1.00[CHB][hapmap]
rs2746440	1.00[CHB][hapmap]
rs398483	1.00[CHB][hapmap]
rs406149	1.00[CHB][hapmap]
rs41431945	1.00[CHB][hapmap]
rs57567824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58082927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58880219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59257883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7453441	1.00[CHB][hapmap]
rs7739951	1.00[CHB][hapmap]
rs7743188	1.00[CHB][hapmap]
rs7773204	1.00[CHB][hapmap]
rs9349730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9349735	1.00[CHB][hapmap]
rs9357818	1.00[EUR][1000 genomes]
rs9367588	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367596	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9370329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370335	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs9382374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382381	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382382	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs9382393	0.83[AMR][1000 genomes]
rs9382394	0.83[AMR][1000 genomes]
rs9382395	0.83[AMR][1000 genomes]
rs9395992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9395993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9395994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9395998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396001	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9475077	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54653200-54667800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:54663000-54667800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:54664800-54666600	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr6:54665200-54666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:54665600-54666800	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:54666000-54666200	Enhancers	Hela-S3	cervix
7	chr6:54666000-54666200	Enhancers	NHEK	skin

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