Variant report

Variant	rs58880219
Chromosome Location	chr6:54552297-54552298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54547491..54552528-chr6:54710025..54715322,6	MCF-7	breast:
2	chr6:54551257..54553977-chr6:54562035..54564580,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11962935	1.00[EUR][1000 genomes]
rs56798185	1.00[EUR][1000 genomes]
rs57567824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58082927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59257883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913275	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357818	1.00[EUR][1000 genomes]
rs9367588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382381	1.00[EUR][1000 genomes]
rs9382382	1.00[EUR][1000 genomes]
rs9382385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382388	1.00[AMR][1000 genomes]
rs9395992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9396001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813136	chr6:54550530-54557193	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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