Variant report
| Variant | rs9382381 |
|---|---|
| Chromosome Location | chr6:54661519-54661520 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:54659157..54661825-chr6:54711858..54713372,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs57567824 | 1.00[EUR][1000 genomes] |
| rs58082927 | 1.00[EUR][1000 genomes] |
| rs58880219 | 1.00[EUR][1000 genomes] |
| rs59257883 | 1.00[EUR][1000 genomes] |
| rs6913275 | 1.00[EUR][1000 genomes] |
| rs9349730 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9357817 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9357818 | 1.00[EUR][1000 genomes] |
| rs9367588 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9367589 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9367590 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9367592 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9370329 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9382374 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9382377 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9382378 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9382379 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9382382 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9382385 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9382386 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9395992 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9395993 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9395994 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9395998 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:54653200-54667800 | Weak transcription | Placenta Amnion | Placenta Amnion |
