Variant report

Variant	rs67012853
Chromosome Location	chr13:80239911-80239912
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2876746	0.82[AMR][1000 genomes]
rs2876747	0.82[AMR][1000 genomes]
rs4141826	0.80[AMR][1000 genomes]
rs4885652	0.80[AMR][1000 genomes]
rs4885653	0.80[AMR][1000 genomes]
rs4885655	0.83[AMR][1000 genomes]
rs6563129	0.80[AMR][1000 genomes]
rs9574452	0.80[AMR][1000 genomes]
rs9574455	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9601258	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1443405	chr13:80239910-80239911	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80233200-80247400	Weak transcription	Left Ventricle	heart
2	chr13:80233400-80248800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80233800-80241800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:80234000-80241600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:80238600-80247600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr13:80238600-80255000	Weak transcription	Psoas Muscle	Psoas
7	chr13:80239200-80244200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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