Variant report

Variant	rs2876746
Chromosome Location	chr13:80231558-80231559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12430226	0.88[EUR][1000 genomes]
rs2181432	0.88[EUR][1000 genomes]
rs2208936	0.88[EUR][1000 genomes]
rs2208938	0.83[EUR][1000 genomes]
rs2208943	0.85[EUR][1000 genomes]
rs2329126	0.87[EUR][1000 genomes]
rs2876742	0.86[EUR][1000 genomes]
rs2876747	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3920578	0.88[EUR][1000 genomes]
rs4141826	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4884135	0.80[AFR][1000 genomes]
rs4885647	0.87[EUR][1000 genomes]
rs4885649	0.87[EUR][1000 genomes]
rs4885652	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885653	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885655	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6563129	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67012853	0.82[AMR][1000 genomes]
rs7319427	0.80[ASN][1000 genomes]
rs767778	0.87[EUR][1000 genomes]
rs7994255	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7994620	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9318645	0.87[EUR][1000 genomes]
rs9318647	0.88[EUR][1000 genomes]
rs9318650	0.82[EUR][1000 genomes]
rs9318651	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9530940	0.88[EUR][1000 genomes]
rs9530941	0.88[EUR][1000 genomes]
rs9530942	0.88[EUR][1000 genomes]
rs9530943	0.88[EUR][1000 genomes]
rs9530944	0.88[EUR][1000 genomes]
rs9545159	0.87[EUR][1000 genomes]
rs9545160	0.87[EUR][1000 genomes]
rs9545166	0.88[EUR][1000 genomes]
rs9565514	0.87[AFR][1000 genomes]
rs9565515	0.90[AFR][1000 genomes]
rs9574448	0.89[AFR][1000 genomes]
rs9574450	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9574452	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9574455	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9593407	0.89[AFR][1000 genomes]
rs9601256	0.87[EUR][1000 genomes]
rs9601258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9805769	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80222000-80232600	Weak transcription	Fetal Muscle Leg	muscle
2	chr13:80222400-80232600	Weak transcription	Psoas Muscle	Psoas
3	chr13:80223200-80232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:80223200-80232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:80223200-80232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:80229000-80232600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:80229000-80232600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:80230000-80231800	Weak transcription	Fetal Heart	heart
9	chr13:80230600-80232600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:80231000-80231600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:80231000-80232400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:80231000-80232400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:80231400-80231600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:80231400-80232600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr13:80231400-80232600	Weak transcription	Lung	lung
16	chr13:80231400-80234600	Enhancers	HSMMtube	muscle

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