Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1932197	0.88[EUR][1000 genomes]
rs2093620	0.81[EUR][1000 genomes]
rs2783130	0.89[EUR][1000 genomes]
rs2876746	0.80[ASN][1000 genomes]
rs2876747	0.81[ASN][1000 genomes]
rs4141825	0.88[EUR][1000 genomes]
rs4141826	0.80[ASN][1000 genomes]
rs4885652	0.81[ASN][1000 genomes]
rs4885655	0.80[ASN][1000 genomes]
rs6563121	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6563129	0.80[ASN][1000 genomes]
rs7994620	0.81[ASN][1000 genomes]
rs9545145	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545146	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545154	0.88[EUR][1000 genomes]
rs9545155	0.87[EUR][1000 genomes]
rs9545158	0.87[EUR][1000 genomes]
rs9574452	0.81[ASN][1000 genomes]
rs9574455	0.81[ASN][1000 genomes]
rs9601248	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9601258	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:80170200-80176800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80170200-80178800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr13:80172000-80178800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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