Variant report

Variant	rs2093620
Chromosome Location	chr13:80188089-80188090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12430226	0.82[ASN][1000 genomes]
rs1932197	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2181432	0.83[ASN][1000 genomes]
rs2208936	0.81[ASN][1000 genomes]
rs2329126	0.85[ASN][1000 genomes]
rs2783129	0.86[AMR][1000 genomes]
rs2783130	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2876742	0.86[ASN][1000 genomes]
rs3920578	0.84[ASN][1000 genomes]
rs4141825	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4885647	0.85[ASN][1000 genomes]
rs4885649	0.84[ASN][1000 genomes]
rs6563121	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7319427	0.81[EUR][1000 genomes]
rs767778	0.84[ASN][1000 genomes]
rs7994255	0.83[ASN][1000 genomes]
rs9318645	0.85[ASN][1000 genomes]
rs9318647	0.83[ASN][1000 genomes]
rs9318650	0.81[ASN][1000 genomes]
rs9318651	0.81[ASN][1000 genomes]
rs9530940	0.84[ASN][1000 genomes]
rs9530941	0.84[ASN][1000 genomes]
rs9530942	0.83[ASN][1000 genomes]
rs9530943	0.83[ASN][1000 genomes]
rs9530944	0.81[ASN][1000 genomes]
rs9545154	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545155	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9545158	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545159	0.85[ASN][1000 genomes]
rs9545160	0.85[ASN][1000 genomes]
rs9545166	0.83[ASN][1000 genomes]
rs9574450	0.83[ASN][1000 genomes]
rs9601256	0.84[ASN][1000 genomes]
rs9805769	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80180200-80188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:80186000-80188200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80188000-80188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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