Variant report

Variant	rs2783129
Chromosome Location	chr13:80168720-80168721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1932197	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2093620	0.86[AMR][1000 genomes]
rs2783130	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4141825	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6563121	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9545154	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9545155	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9545158	0.86[EUR][1000 genomes]
rs9601248	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:80166600-80169000	Enhancers	HMEC	breast
3	chr13:80166800-80168800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:80166800-80168800	Enhancers	NHEK	skin
5	chr13:80167000-80169000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:80167200-80169000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:80168400-80171600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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