Variant report

Variant	rs2783130
Chromosome Location	chr13:80170160-80170161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12430226	0.81[ASN][1000 genomes]
rs1932197	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093620	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2181432	0.82[ASN][1000 genomes]
rs2208936	0.81[ASN][1000 genomes]
rs2329126	0.84[ASN][1000 genomes]
rs2783129	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2876742	0.85[ASN][1000 genomes]
rs3920578	0.83[ASN][1000 genomes]
rs4141825	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4885647	0.84[ASN][1000 genomes]
rs4885649	0.83[ASN][1000 genomes]
rs6563121	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7319427	0.89[EUR][1000 genomes]
rs767778	0.84[ASN][1000 genomes]
rs7994255	0.82[ASN][1000 genomes]
rs9318645	0.84[ASN][1000 genomes]
rs9318647	0.82[ASN][1000 genomes]
rs9318650	0.81[ASN][1000 genomes]
rs9318651	0.81[ASN][1000 genomes]
rs9530940	0.83[ASN][1000 genomes]
rs9530941	0.83[ASN][1000 genomes]
rs9530942	0.82[ASN][1000 genomes]
rs9530943	0.82[ASN][1000 genomes]
rs9530944	0.81[ASN][1000 genomes]
rs9545145	0.87[EUR][1000 genomes]
rs9545154	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545155	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545158	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545159	0.84[ASN][1000 genomes]
rs9545160	0.84[ASN][1000 genomes]
rs9545166	0.82[ASN][1000 genomes]
rs9574450	0.82[ASN][1000 genomes]
rs9601248	0.86[EUR][1000 genomes]
rs9601256	0.83[ASN][1000 genomes]
rs9805769	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80168400-80171600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:80169400-80170200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:80169600-80170200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:80169600-80170200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:80169800-80170200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:80169800-80170200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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