Variant report

Variant	rs4141825
Chromosome Location	chr13:80190848-80190849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12430226	0.83[ASN][1000 genomes]
rs1932197	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2093620	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2181432	0.84[ASN][1000 genomes]
rs2208936	0.82[ASN][1000 genomes]
rs2208943	0.81[ASN][1000 genomes]
rs2329126	0.86[ASN][1000 genomes]
rs2783129	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2783130	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876742	0.89[ASN][1000 genomes]
rs3920578	0.85[ASN][1000 genomes]
rs4885647	0.86[ASN][1000 genomes]
rs4885649	0.85[ASN][1000 genomes]
rs6563121	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7319427	0.88[EUR][1000 genomes]
rs767778	0.87[ASN][1000 genomes]
rs7994255	0.84[ASN][1000 genomes]
rs9318645	0.86[ASN][1000 genomes]
rs9318647	0.84[ASN][1000 genomes]
rs9318650	0.82[ASN][1000 genomes]
rs9318651	0.82[ASN][1000 genomes]
rs9530940	0.85[ASN][1000 genomes]
rs9530941	0.85[ASN][1000 genomes]
rs9530942	0.84[ASN][1000 genomes]
rs9530943	0.84[ASN][1000 genomes]
rs9530944	0.82[ASN][1000 genomes]
rs9545145	0.85[EUR][1000 genomes]
rs9545154	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545155	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9545158	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9545159	0.86[ASN][1000 genomes]
rs9545160	0.86[ASN][1000 genomes]
rs9545166	0.84[ASN][1000 genomes]
rs9574450	0.84[ASN][1000 genomes]
rs9601248	0.84[EUR][1000 genomes]
rs9601256	0.85[ASN][1000 genomes]
rs9805769	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80189400-80191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80189400-80192600	Weak transcription	HMEC	breast
3	chr13:80189400-80194400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:80189400-80195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:80189600-80192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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