Variant report

Variant	rs670150
Chromosome Location	chr6:147769539-147769540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147762643..147764759-chr6:147769331..147771123,2	K562	blood:
2	chr6:147752454..147754748-chr6:147767356..147770083,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1221997	0.86[EUR][1000 genomes]
rs444339	0.91[ASN][1000 genomes]
rs495106	0.91[ASN][1000 genomes]
rs566729	0.91[ASN][1000 genomes]
rs572217	0.91[ASN][1000 genomes]
rs574551	0.91[ASN][1000 genomes]
rs599429	0.91[ASN][1000 genomes]
rs60605934	0.91[ASN][1000 genomes]
rs633147	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147767800-147769600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:147768600-147770000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
3	chr6:147768600-147770400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:147768600-147771000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:147768800-147769800	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:147768800-147770000	Enhancers	Pancreas	Pancrea
7	chr6:147768800-147770200	Enhancers	Gastric	stomach
8	chr6:147768800-147771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:147768800-147771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:147769000-147769600	Active TSS	Brain Angular Gyrus	brain
11	chr6:147769000-147770200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:147769000-147770400	Flanking Active TSS	K562	blood
13	chr6:147769200-147769600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:147769200-147769600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:147769200-147769600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:147769200-147769600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:147769200-147769800	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:147769200-147769800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:147769200-147769800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:147769200-147769800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:147769200-147769800	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr6:147769200-147770000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:147769200-147770400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:147769200-147770600	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr6:147769200-147770600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:147769200-147771000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:147769200-147773400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:147769400-147769600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:147769400-147769800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:147769400-147769800	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:147769400-147769800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr6:147769400-147769800	Enhancers	Fetal Muscle Leg	muscle
33	chr6:147769400-147770000	Enhancers	Brain Hippocampus Middle	brain
34	chr6:147769400-147771000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:147769400-147771000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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