Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:147740272..147742027-chr6:147742891..147745497,2	K562	blood:
2	chr6:147738644..147741083-chr6:147742445..147744911,2	K562	blood:
3	chr6:147721410..147723545-chr6:147743708..147746070,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10499248	1.00[AFR][1000 genomes]
rs13205501	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs13207751	1.00[AFR][1000 genomes]
rs13211031	1.00[AFR][1000 genomes]
rs13211278	1.00[AFR][1000 genomes]
rs13214443	1.00[ASW][hapmap]
rs13220031	1.00[AFR][1000 genomes]
rs13220208	1.00[AFR][1000 genomes]
rs167793	0.90[EUR][1000 genomes]
rs34358483	1.00[AFR][1000 genomes]
rs35658484	1.00[AFR][1000 genomes]
rs35987208	1.00[AFR][1000 genomes]
rs377609	0.87[EUR][1000 genomes]
rs444339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495106	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572217	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60605934	1.00[ASN][1000 genomes]
rs633147	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs670150	0.91[ASN][1000 genomes]
rs71566478	1.00[AFR][1000 genomes]
rs71566479	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830839	chr6:147584914-147757264	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147742000-147743800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:147743000-147743800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:147743200-147744200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:147743600-147744000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:147743600-147744600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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