Variant report

Variant	rs35987208
Chromosome Location	chr6:147828144-147828145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:147827554-147828344	HCT-116	colon:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
2	RAD21	chr6:147827681-147828388	ECC-1	luminal epithelium:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
3	CTCF	chr6:147828040-147828190	GM12864	blood:	n/a	n/a
4	RAD21	chr6:147827676-147828220	ECC-1	luminal epithelium:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
5	CTBP2	chr6:147827814-147828813	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr6:147827698-147828254	IMR90	lung:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
7	FOXP2	chr6:147827847-147828158	PFSK-1	brain:	n/a	n/a
8	RAD21	chr6:147827631-147828348	SK-N-SH	brain:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
9	RAD21	chr6:147827713-147828149	HepG2	liver:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
10	CTCF	chr6:147827564-147828300	SK-N-SH	brain:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
11	RAD21	chr6:147827788-147828272	K562	blood:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
12	TCF7L2	chr6:147827835-147828250	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr6:147827560-147828292	HCT-116	colon:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
14	RAD21	chr6:147827712-147828273	H1-hESC	embryonic stem cell:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
15	RAD21	chr6:147827627-147828320	A549	lung:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
16	SUZ12	chr6:147827959-147831279	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr6:147827644-147828232	HepG2	liver:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
18	SIN3A	chr6:147827832-147828240	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr6:147827704-147828230	H1-hESC	embryonic stem cell:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
20	CTCF	chr6:147827715-147828282	IMR90	lung:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
21	MAX	chr6:147827712-147828218	A549	lung:	n/a	n/a
22	RAD21	chr6:147827686-147828195	A549	lung:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
23	SMC3	chr6:147827733-147828155	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr6:147827759-147828163	H1-hESC	embryonic stem cell:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
25	CTCF	chr6:147827489-147828403	A549	lung:	n/a	chr6:147827918-147827936 chr6:147827919-147827935 chr6:147828386-147828394
26	CTCF	chr6:147827587-147828267	HCT-116	colon:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
27	CTCF	chr6:147827759-147828166	K562	blood:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
28	SMC3	chr6:147827729-147828380	SK-N-SH	brain:	n/a	n/a
29	RAD21	chr6:147827577-147828341	HCT-116	colon:	n/a	chr6:147827919-147827938 chr6:147828092-147828106
30	MAZ	chr6:147827698-147828389	IMR90	lung:	n/a	n/a
31	MAZ	chr6:147827747-147828277	K562	blood:	n/a	n/a
32	SMC3	chr6:147827744-147828313	K562	blood:	n/a	n/a
33	CTCF	chr6:147827758-147828207	K562	blood:	n/a	chr6:147827918-147827936 chr6:147827919-147827935
34	HMGN3	chr6:147827847-147828167	K562	blood:	n/a	n/a
35	ZBTB7A	chr6:147827837-147828409	ECC-1	luminal epithelium:	n/a	chr6:147827926-147827935
36	CTCF	chr6:147828000-147828150	A549	lung:	n/a	n/a
37	ZNF263	chr6:147827811-147831448	HEK293-T-REx	kidney:	n/a	n/a
38	RAD21	chr6:147827730-147828347	H1-hESC	embryonic stem cell:	n/a	chr6:147827919-147827938 chr6:147828092-147828106

No.	Distal block	Cell Line	Cell type
1	chr6:147827833..147828480-chr6:148785570..148786546,4	K562	blood:
2	chr6:147827401..147828161-chr6:148487222..148488157,2	K562	blood:
3	chr6:147827861..147828432-chr6:148500915..148501627,3	K562	blood:

Variant related genes	Relation type
SAMD5	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10499248	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205501	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13207751	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210148	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211031	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211278	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13214443	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218201	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13220031	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13220208	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17076897	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34358483	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34790023	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35009077	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35506695	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35658484	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs574551	1.00[AFR][1000 genomes]
rs599429	1.00[AFR][1000 genomes]
rs71566478	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71566479	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688849	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689689	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147827800-147828200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:147827800-147828200	Active TSS	Brain Anterior Caudate	brain
3	chr6:147827800-147828200	Flanking Active TSS	Fetal Brain Male	brain
4	chr6:147827800-147828200	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr6:147827800-147828400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:147827800-147828400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:147827800-147828400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:147827800-147828400	Flanking Active TSS	Fetal Kidney	kidney
9	chr6:147827800-147828400	Flanking Active TSS	HMEC	breast
10	chr6:147827800-147828400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
11	chr6:147827800-147828400	Flanking Bivalent TSS/Enh	Osteobl	bone
12	chr6:147827800-147828600	Flanking Active TSS	HSMM	muscle
13	chr6:147827800-147828800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:147827800-147828800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:147827800-147828800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
16	chr6:147827800-147829000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:147827800-147829200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chr6:147827800-147829200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr6:147827800-147829200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
20	chr6:147827800-147829600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:147827800-147829600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr6:147827800-147830200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:147827800-147830800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr6:147827800-147831800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:147827800-147834000	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
27	chr6:147828000-147828200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:147828000-147828200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:147828000-147828200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:147828000-147828200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:147828000-147828200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
38	chr6:147828000-147828200	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:147828000-147828200	Active TSS	Muscle Satellite Cultured Cells	--
41	chr6:147828000-147828200	Active TSS	Brain Cingulate Gyrus	brain
42	chr6:147828000-147828200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
43	chr6:147828000-147828200	Bivalent/Poised TSS	Esophagus	oesophagus
44	chr6:147828000-147828200	Flanking Active TSS	Fetal Lung	lung
45	chr6:147828000-147828200	Active TSS	Left Ventricle	heart
46	chr6:147828000-147828200	Flanking Active TSS	Pancreas	Pancrea
47	chr6:147828000-147828200	Transcr. at gene 5' and 3'	Right Atrium	heart
48	chr6:147828000-147828200	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr6:147828000-147828200	Flanking Active TSS	Spleen	Spleen
50	chr6:147828000-147828200	Flanking Bivalent TSS/Enh	K562	blood

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