Variant report

Variant	rs10499248
Chromosome Location	chr6:147831992-147831993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147830521..147832164-chr6:147833225..147837282,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13205501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13207751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13210148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211031	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13211278	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13214443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13218201	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13220031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13220208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17076897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34358483	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34790023	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35009077	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35506695	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35658484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35987208	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574551	1.00[AFR][1000 genomes]
rs599429	1.00[AFR][1000 genomes]
rs71547193	0.81[AMR][1000 genomes]
rs71566478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71566479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688849	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9689689	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147827800-147834000	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr6:147828400-147832400	Active TSS	Fetal Kidney	kidney
3	chr6:147828600-147832000	Active TSS	Fetal Intestine Large	intestine
4	chr6:147828600-147832000	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr6:147828600-147832200	Active TSS	HSMMtube	muscle
6	chr6:147828800-147832200	Active TSS	Muscle Satellite Cultured Cells	--
7	chr6:147828800-147832200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:147828800-147832400	Active TSS	Fetal Intestine Small	intestine
9	chr6:147828800-147832600	Active TSS	Brain Anterior Caudate	brain
10	chr6:147829400-147832400	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr6:147830400-147832000	Flanking Active TSS	HUVEC	blood vessel
12	chr6:147830600-147832600	Bivalent Enhancer	HepG2	liver
13	chr6:147830800-147832200	Bivalent/Poised TSS	Placenta	Placenta
14	chr6:147831000-147832200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:147831000-147832600	Flanking Active TSS	Liver	Liver
16	chr6:147831000-147832600	Flanking Active TSS	Fetal Lung	lung
17	chr6:147831000-147832600	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr6:147831200-147832600	Bivalent/Poised TSS	Fetal Brain Male	brain
19	chr6:147831400-147832400	Active TSS	NHLF	lung
20	chr6:147831400-147832600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:147831400-147836400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:147831400-147838800	Weak transcription	Esophagus	oesophagus
23	chr6:147831600-147832000	Flanking Active TSS	HSMM	muscle
24	chr6:147831600-147832200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:147831600-147832200	Flanking Active TSS	HMEC	breast
26	chr6:147831600-147832400	Enhancers	Ovary	ovary
27	chr6:147831600-147832400	Bivalent Enhancer	Stomach Mucosa	stomach
28	chr6:147831600-147832600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:147831600-147832600	Enhancers	A549	lung
30	chr6:147831600-147852000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:147831800-147832000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:147831800-147832200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr6:147831800-147832200	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr6:147831800-147832200	Bivalent Enhancer	K562	blood
35	chr6:147831800-147832400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:147831800-147832400	Flanking Active TSS	Fetal Stomach	stomach
37	chr6:147831800-147832400	Enhancers	NHEK	skin
38	chr6:147831800-147832600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links