Variant report

Variant	rs377609
Chromosome Location	chr6:147759111-147759112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1221997	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs167793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs444339	0.92[EUR][1000 genomes]
rs495106	0.92[EUR][1000 genomes]
rs566729	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs572217	0.92[EUR][1000 genomes]
rs574551	0.87[EUR][1000 genomes]
rs599429	0.87[EUR][1000 genomes]
rs633147	0.97[EUR][1000 genomes]
rs9497779	0.93[CHB][hapmap];1.00[CHD][hapmap];0.80[YRI][hapmap];0.89[ASN][1000 genomes]
rs9497780	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147755800-147763400	Weak transcription	Ovary	ovary
2	chr6:147757400-147762800	Weak transcription	Fetal Stomach	stomach
3	chr6:147758600-147760000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr6:147758800-147759400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr6:147758800-147761200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr6:147759000-147759400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr6:147759000-147759800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr6:147759000-147760000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr6:147759000-147760000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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