Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147759968..147761731-chr6:147764035..147766151,2	K562	blood:
2	chr6:147759968..147763538-chr6:147764035..147766961,5	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1221997	0.84[ASN][1000 genomes]
rs1496032	1.00[EUR][1000 genomes]
rs1496035	1.00[EUR][1000 genomes]
rs167793	0.83[ASN][1000 genomes]
rs17054180	1.00[EUR][1000 genomes]
rs17076675	1.00[EUR][1000 genomes]
rs17076680	1.00[EUR][1000 genomes]
rs17076684	1.00[EUR][1000 genomes]
rs17076686	1.00[EUR][1000 genomes]
rs17076695	1.00[EUR][1000 genomes]
rs17076710	1.00[EUR][1000 genomes]
rs17076713	1.00[EUR][1000 genomes]
rs2298700	1.00[EUR][1000 genomes]
rs3734476	1.00[EUR][1000 genomes]
rs3737183	1.00[EUR][1000 genomes]
rs377609	0.87[ASN][1000 genomes]
rs59163794	1.00[EUR][1000 genomes]
rs7742922	1.00[EUR][1000 genomes]
rs9485179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497779	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886759	chr6:147686274-147764267	Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv525703	chr6:147759534-147767235	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147755800-147763400	Weak transcription	Ovary	ovary
2	chr6:147757400-147762800	Weak transcription	Fetal Stomach	stomach
3	chr6:147760400-147761400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr6:147760600-147767200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:147760800-147761600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr6:147761000-147761400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr6:147761000-147761600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr6:147761000-147762400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:147761200-147761400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:147761200-147761400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr6:147761200-147761600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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