Variant report

Variant	rs9485179
Chromosome Location	chr6:147773917-147773918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1496032	1.00[EUR][1000 genomes]
rs1496035	1.00[EUR][1000 genomes]
rs17054180	1.00[EUR][1000 genomes]
rs17076675	1.00[EUR][1000 genomes]
rs17076680	1.00[EUR][1000 genomes]
rs17076684	1.00[EUR][1000 genomes]
rs17076686	1.00[EUR][1000 genomes]
rs17076695	1.00[EUR][1000 genomes]
rs17076710	1.00[EUR][1000 genomes]
rs17076713	1.00[EUR][1000 genomes]
rs2298700	1.00[EUR][1000 genomes]
rs3734476	1.00[EUR][1000 genomes]
rs3737183	1.00[EUR][1000 genomes]
rs59163794	1.00[EUR][1000 genomes]
rs7742922	1.00[EUR][1000 genomes]
rs9497779	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9497780	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019354	chr6:147739448-147774642	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538468	chr6:147739448-147774642	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv970065	chr6:147771990-147774740	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147771000-147774600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:147771000-147774600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:147771000-147774600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:147771000-147780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:147772200-147774600	Weak transcription	K562	blood
6	chr6:147772200-147776000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:147773200-147774600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:147773200-147774800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:147773200-147774800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:147773200-147775000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:147773400-147774000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:147773400-147774000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:147773400-147774800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:147773400-147775000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:147773400-147775000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:147773600-147774800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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