Variant report

Variant	rs67025604
Chromosome Location	chr3:94887424-94887425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:94887371-94887459	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RPS18P6	TF binding region

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10933902	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10933912	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10933932	0.81[EUR][1000 genomes]
rs11708513	0.94[ASN][1000 genomes]
rs11708877	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11708909	0.95[ASN][1000 genomes]
rs11712473	0.95[ASN][1000 genomes]
rs11712965	0.95[ASN][1000 genomes]
rs11713390	0.95[ASN][1000 genomes]
rs11713846	0.95[ASN][1000 genomes]
rs11715007	0.97[ASN][1000 genomes]
rs11719105	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11917495	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11918166	0.80[EUR][1000 genomes]
rs11921481	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923675	0.97[ASN][1000 genomes]
rs11923716	0.81[EUR][1000 genomes]
rs11923738	0.97[ASN][1000 genomes]
rs11925057	0.97[ASN][1000 genomes]
rs12494376	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12630818	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17497733	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2310402	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2310403	0.81[EUR][1000 genomes]
rs2310406	0.81[EUR][1000 genomes]
rs3905401	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4132577	0.99[ASN][1000 genomes]
rs4610223	0.81[EUR][1000 genomes]
rs4857019	0.95[ASN][1000 genomes]
rs4857020	0.95[ASN][1000 genomes]
rs58034501	0.86[ASN][1000 genomes]
rs58549043	0.94[ASN][1000 genomes]
rs67828560	0.94[ASN][1000 genomes]
rs6790397	0.84[ASN][1000 genomes]
rs72615781	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72615782	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72615787	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72615791	0.81[EUR][1000 genomes]
rs7620908	0.95[ASN][1000 genomes]
rs7621233	0.91[ASN][1000 genomes]
rs7632132	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7643795	0.95[ASN][1000 genomes]
rs9288845	0.94[ASN][1000 genomes]
rs9288846	0.95[ASN][1000 genomes]
rs9825156	0.90[ASN][1000 genomes]
rs9842570	0.95[ASN][1000 genomes]
rs9845130	0.94[ASN][1000 genomes]
rs9855703	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590996	chr3:94857157-94914290	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv590997	chr3:94865957-94918524	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv877174	chr3:94867122-94983900	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	esv2754985	chr3:94868320-94970627	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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