Variant report

Variant	rs11708877
Chromosome Location	chr3:94873603-94873604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1012061	0.83[EUR][1000 genomes]
rs10933902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933912	0.83[EUR][1000 genomes]
rs10933932	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10933940	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10933941	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10933955	0.80[ASN][1000 genomes]
rs11713740	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11719000	0.84[CEU][hapmap]
rs11719105	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916841	1.00[ASN][1000 genomes]
rs11917495	0.83[EUR][1000 genomes]
rs11918082	0.83[EUR][1000 genomes]
rs11918166	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11921481	0.83[EUR][1000 genomes]
rs11923227	0.98[ASN][1000 genomes]
rs11923257	0.98[ASN][1000 genomes]
rs11923716	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11924111	0.84[EUR][1000 genomes]
rs11928664	0.84[EUR][1000 genomes]
rs12496724	0.81[ASN][1000 genomes]
rs12630013	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12630818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630859	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12631889	0.98[ASN][1000 genomes]
rs12634496	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12639003	0.85[EUR][1000 genomes]
rs13066378	0.80[ASN][1000 genomes]
rs13070939	0.81[ASN][1000 genomes]
rs13081547	0.80[ASN][1000 genomes]
rs13091172	0.81[ASN][1000 genomes]
rs1356269	0.80[ASN][1000 genomes]
rs1476323	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1516605	0.84[EUR][1000 genomes]
rs1516606	0.84[EUR][1000 genomes]
rs1519160	0.83[EUR][1000 genomes]
rs17383687	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17383861	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17384029	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17384064	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17442941	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17497733	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1914063	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1968016	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048861	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048863	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2176276	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2310403	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2310406	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2311285	0.84[EUR][1000 genomes]
rs3849443	1.00[ASN][1000 genomes]
rs3905401	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3907753	1.00[ASN][1000 genomes]
rs3913801	0.81[AFR][1000 genomes]
rs3926894	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4535228	0.80[ASN][1000 genomes]
rs4610223	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4857157	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4857159	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs509321	0.84[EUR][1000 genomes]
rs511189	0.84[EUR][1000 genomes]
rs533453	0.84[EUR][1000 genomes]
rs56233996	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57291530	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58743887	0.98[ASN][1000 genomes]
rs58823483	0.84[EUR][1000 genomes]
rs58977036	0.98[ASN][1000 genomes]
rs59007421	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59469832	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60875944	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61446477	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67025604	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6774134	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6786697	0.84[EUR][1000 genomes]
rs6807708	0.84[EUR][1000 genomes]
rs6810229	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72615781	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72615787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72615791	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72618497	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72618498	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72618499	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72618500	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72620004	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72620005	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72620006	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72620007	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7429603	0.84[EUR][1000 genomes]
rs7626749	0.84[CEU][hapmap]
rs7627614	0.84[EUR][1000 genomes]
rs7628826	0.94[ASN][1000 genomes]
rs7632132	0.82[EUR][1000 genomes]
rs7639829	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809394	0.80[ASN][1000 genomes]
rs9812403	0.92[ASN][1000 genomes]
rs9813568	0.84[EUR][1000 genomes]
rs9832182	0.80[ASN][1000 genomes]
rs9838302	0.84[EUR][1000 genomes]
rs9847352	0.98[ASN][1000 genomes]
rs9854077	0.84[CEU][hapmap]
rs9855077	0.84[EUR][1000 genomes]
rs9864255	0.92[ASN][1000 genomes]
rs9868858	0.98[ASN][1000 genomes]
rs9878073	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590996	chr3:94857157-94914290	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv590997	chr3:94865957-94918524	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv877174	chr3:94867122-94983900	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	esv2754985	chr3:94868320-94970627	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94873200-94874400	Enhancers	Hela-S3	cervix
2	chr3:94873400-94874400	Enhancers	NH-A	brain
3	chr3:94873600-94873800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:94873600-94873800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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