Variant report

Variant	rs7628826
Chromosome Location	chr3:94839708-94839709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10511151	0.80[EUR][1000 genomes]
rs10933902	0.94[ASN][1000 genomes]
rs10933932	0.83[ASN][1000 genomes]
rs11708513	0.80[EUR][1000 genomes]
rs11708877	0.94[ASN][1000 genomes]
rs11708909	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11712473	0.80[EUR][1000 genomes]
rs11712965	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11713740	0.94[ASN][1000 genomes]
rs11713846	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11719105	0.94[ASN][1000 genomes]
rs11916841	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11918166	0.82[ASN][1000 genomes]
rs11923227	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11923257	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11923716	0.83[ASN][1000 genomes]
rs12486859	0.80[EUR][1000 genomes]
rs12630818	0.94[ASN][1000 genomes]
rs12631889	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12634496	0.94[ASN][1000 genomes]
rs13070939	0.80[EUR][1000 genomes]
rs17497733	0.93[ASN][1000 genomes]
rs2310403	0.83[ASN][1000 genomes]
rs2310406	0.82[ASN][1000 genomes]
rs3849443	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3905401	0.89[ASN][1000 genomes]
rs3907753	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4610223	0.83[ASN][1000 genomes]
rs58743887	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58977036	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67828560	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72615781	0.94[ASN][1000 genomes]
rs72615782	0.94[ASN][1000 genomes]
rs72615787	0.91[ASN][1000 genomes]
rs72615791	0.83[ASN][1000 genomes]
rs7619484	0.81[EUR][1000 genomes]
rs7620908	0.81[EUR][1000 genomes]
rs7621233	0.87[EUR][1000 genomes]
rs7643795	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9288845	0.80[EUR][1000 genomes]
rs9288846	0.80[EUR][1000 genomes]
rs9809394	0.80[EUR][1000 genomes]
rs9812403	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9825156	0.80[EUR][1000 genomes]
rs9832182	0.80[EUR][1000 genomes]
rs9842570	0.81[EUR][1000 genomes]
rs9845130	0.80[EUR][1000 genomes]
rs9847352	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9855703	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9864255	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9868858	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9878073	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv590993	chr3:94759504-94841342	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1012191	chr3:94769139-94854973	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv536652	chr3:94769139-94854973	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94839600-94840600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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