Variant report

Variant	rs12634496
Chromosome Location	chr3:94846254-94846255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1012061	0.82[EUR][1000 genomes]
rs10212430	0.84[AMR][1000 genomes]
rs10933902	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10933932	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10933940	0.83[EUR][1000 genomes]
rs10933941	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11707669	0.87[AMR][1000 genomes]
rs11708877	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713740	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11916841	0.98[ASN][1000 genomes]
rs11918082	0.82[EUR][1000 genomes]
rs11918166	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11923227	1.00[ASN][1000 genomes]
rs11923257	1.00[ASN][1000 genomes]
rs11923716	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11924111	0.82[EUR][1000 genomes]
rs11928664	0.82[EUR][1000 genomes]
rs12630013	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12630818	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12630859	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12631889	1.00[ASN][1000 genomes]
rs12639003	0.84[EUR][1000 genomes]
rs1476323	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1516605	0.82[EUR][1000 genomes]
rs1516606	0.82[EUR][1000 genomes]
rs1519160	0.81[EUR][1000 genomes]
rs17383687	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17383861	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17384029	0.82[EUR][1000 genomes]
rs17384064	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17442941	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17497733	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1968016	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2048861	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2176276	0.82[EUR][1000 genomes]
rs2310403	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2310406	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2311285	0.82[EUR][1000 genomes]
rs3849443	0.98[ASN][1000 genomes]
rs3905401	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3907753	0.98[ASN][1000 genomes]
rs3926894	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4610223	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4857157	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4857159	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs509321	0.82[EUR][1000 genomes]
rs511189	0.82[EUR][1000 genomes]
rs533453	0.82[EUR][1000 genomes]
rs56233996	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57291530	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58743887	1.00[ASN][1000 genomes]
rs58823483	0.82[EUR][1000 genomes]
rs58977036	1.00[ASN][1000 genomes]
rs59007421	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59469832	0.81[EUR][1000 genomes]
rs60875944	0.82[EUR][1000 genomes]
rs61446477	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6774134	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6786697	0.82[EUR][1000 genomes]
rs6807708	0.82[EUR][1000 genomes]
rs6810229	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72615781	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72615782	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72615787	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72615791	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72618497	0.83[EUR][1000 genomes]
rs72618498	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72618499	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72618500	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72620004	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72620005	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72620006	0.82[EUR][1000 genomes]
rs72620007	0.82[EUR][1000 genomes]
rs7429603	0.82[EUR][1000 genomes]
rs7624843	0.86[AMR][1000 genomes]
rs7627313	0.86[AMR][1000 genomes]
rs7627614	0.82[EUR][1000 genomes]
rs7628826	0.94[ASN][1000 genomes]
rs7631515	0.86[AMR][1000 genomes]
rs7635097	0.86[AMR][1000 genomes]
rs7639829	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9812403	0.92[ASN][1000 genomes]
rs9813195	0.85[AMR][1000 genomes]
rs9813568	0.82[EUR][1000 genomes]
rs9827377	0.86[AMR][1000 genomes]
rs9830733	0.86[AMR][1000 genomes]
rs9830753	0.86[AMR][1000 genomes]
rs9830901	0.86[AMR][1000 genomes]
rs9838302	0.82[EUR][1000 genomes]
rs9838383	0.86[AMR][1000 genomes]
rs9847352	1.00[ASN][1000 genomes]
rs9850418	0.86[AMR][1000 genomes]
rs9855077	0.82[EUR][1000 genomes]
rs9864255	0.92[ASN][1000 genomes]
rs9868858	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012191	chr3:94769139-94854973	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv536652	chr3:94769139-94854973	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94840200-94855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:94845800-94846400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:94845800-94846800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:94846200-94849600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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