Variant report

Variant	rs9830901
Chromosome Location	chr3:94775114-94775115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1017370	0.82[EUR][1000 genomes]
rs10212430	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021932	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10804440	0.82[EUR][1000 genomes]
rs1120672	0.82[EUR][1000 genomes]
rs11706789	0.83[EUR][1000 genomes]
rs11707669	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710300	0.83[EUR][1000 genomes]
rs11713740	0.84[AMR][1000 genomes]
rs11718955	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs11719000	1.00[CEU][hapmap];0.85[GIH][hapmap];0.92[TSI][hapmap]
rs11720623	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11918258	0.83[EUR][1000 genomes]
rs11919926	0.96[CEU][hapmap]
rs12634496	0.86[AMR][1000 genomes]
rs1368193	0.83[EUR][1000 genomes]
rs1432473	0.81[EUR][1000 genomes]
rs1529652	0.83[EUR][1000 genomes]
rs1529654	0.83[EUR][1000 genomes]
rs1835872	0.81[EUR][1000 genomes]
rs1991752	0.92[CEU][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap]
rs2116611	0.82[EUR][1000 genomes]
rs300090	0.96[CEU][hapmap]
rs300301	0.85[EUR][1000 genomes]
rs300306	0.85[EUR][1000 genomes]
rs380053	0.96[CEU][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs4857129	0.82[EUR][1000 genomes]
rs49698	0.85[EUR][1000 genomes]
rs728066	0.87[EUR][1000 genomes]
rs7624843	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626749	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7627313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634882	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635097	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9714169	0.92[CEU][hapmap];0.88[MEX][hapmap]
rs9809325	0.83[EUR][1000 genomes]
rs9813195	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822197	0.81[EUR][1000 genomes]
rs9822600	0.83[EUR][1000 genomes]
rs9827377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830733	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830753	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838383	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9850418	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9854077	1.00[CEU][hapmap]
rs9861234	0.83[EUR][1000 genomes]
rs9861368	0.91[EUR][1000 genomes]
rs9880324	0.83[EUR][1000 genomes]
rs991552	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv590993	chr3:94759504-94841342	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1012191	chr3:94769139-94854973	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv536652	chr3:94769139-94854973	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9830901	OR5K2	cis	cerebellum	SCAN
rs9830901	DHFRL1	cis	cerebellum	SCAN
rs9830901	OR5H6	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94774400-94777200	Weak transcription	Fetal Heart	heart

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