Variant report

Variant	rs11718955
Chromosome Location	chr3:94680398-94680399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:94680055-94680980	MCF-7	breast:	n/a	n/a
2	EP300	chr3:94680224-94681015	MCF-7	breast:	n/a	n/a
3	CEBPB	chr3:94680203-94681005	MCF-7	breast:	n/a	n/a
4	FOXA1	chr3:94680145-94681001	T-47D	breast:	n/a	n/a
5	CEBPB	chr3:94680308-94680547	HepG2	liver:	n/a	n/a
6	SIN3AK20	chr3:94679901-94681088	MCF-7	breast:	n/a	n/a
7	GATA3	chr3:94680008-94681249	MCF-7	breast:	n/a	n/a
8	FOXM1	chr3:94680206-94680970	MCF-7	breast:	n/a	n/a
9	GATA3	chr3:94679969-94681150	MCF-7	breast:	n/a	n/a
10	EP300	chr3:94680135-94681101	MCF-7	breast:	n/a	n/a
11	EP300	chr3:94680190-94680760	T-47D	breast:	n/a	n/a
12	TEAD4	chr3:94680305-94680998	MCF-7	breast:	n/a	n/a
13	CEBPB	chr3:94680143-94681083	MCF-7	breast:	n/a	n/a
14	RAD21	chr3:94680267-94681026	MCF-7	breast:	n/a	n/a
15	NR2F2	chr3:94680148-94681101	MCF-7	breast:	n/a	n/a
16	MAX	chr3:94680182-94680899	MCF-7	breast:	n/a	n/a
17	NR2F2	chr3:94680274-94681151	MCF-7	breast:	n/a	n/a
18	GATA3	chr3:94680147-94680979	MCF-7	breast:	n/a	n/a
19	HDAC2	chr3:94680171-94680958	MCF-7	breast:	n/a	n/a
20	FOXA1	chr3:94680233-94680960	T-47D	breast:	n/a	n/a
21	TCF7L2	chr3:94680295-94680929	MCF-7	breast:	n/a	chr3:94680530-94680544
22	SIN3AK20	chr3:94680076-94681081	MCF-7	breast:	n/a	n/a
23	FOXA2	chr3:94680343-94680568	HepG2	liver:	n/a	n/a
24	TCF12	chr3:94680110-94681141	MCF-7	breast:	n/a	n/a
25	TCF12	chr3:94680017-94681189	MCF-7	breast:	n/a	n/a
26	GATA3	chr3:94680053-94680958	T-47D	breast:	n/a	n/a
27	HDAC2	chr3:94680145-94681010	MCF-7	breast:	n/a	n/a
28	GATA3	chr3:94680003-94680943	T-47D	breast:	n/a	n/a
29	ZNF217	chr3:94680130-94680975	MCF-7	breast:	n/a	n/a
30	TEAD4	chr3:94680160-94680972	MCF-7	breast:	n/a	n/a

No data

Variant related genes	Relation type
LINC00879	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1017370	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212430	0.81[EUR][1000 genomes]
rs1021932	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10804440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804441	0.99[ASN][1000 genomes]
rs10933818	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1120672	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120673	0.97[ASN][1000 genomes]
rs11706789	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707669	0.81[EUR][1000 genomes]
rs11710300	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719000	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11720623	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11918258	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919926	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1368193	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432468	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1432469	0.99[ASN][1000 genomes]
rs1432473	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529652	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529653	0.99[ASN][1000 genomes]
rs1529654	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549860	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835872	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991752	0.87[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991753	0.90[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs2053009	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2116610	0.93[ASN][1000 genomes]
rs2116611	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370168	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28588046	0.93[ASN][1000 genomes]
rs300066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs300090	0.92[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300301	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300305	0.97[ASN][1000 genomes]
rs300306	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs380053	0.91[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4857128	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4857129	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs49698	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6437515	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6807717	0.97[ASN][1000 genomes]
rs728066	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7622398	0.94[ASN][1000 genomes]
rs7624843	0.81[EUR][1000 genomes]
rs7625912	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7626615	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626749	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627012	0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs7627313	0.81[EUR][1000 genomes]
rs7631515	0.81[EUR][1000 genomes]
rs7635097	0.81[EUR][1000 genomes]
rs9714169	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9809325	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813195	0.81[EUR][1000 genomes]
rs9822197	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9822600	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827377	0.81[EUR][1000 genomes]
rs9830733	0.81[EUR][1000 genomes]
rs9830753	0.81[EUR][1000 genomes]
rs9830901	0.81[EUR][1000 genomes]
rs9850418	0.81[EUR][1000 genomes]
rs9854077	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9857434	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs9861234	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861368	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9880324	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991552	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997528	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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