Variant report

Variant	rs1432469
Chromosome Location	chr3:94680239-94680240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr3:94680055-94680980	MCF-7	breast:	n/a	n/a
2	EP300	chr3:94680224-94681015	MCF-7	breast:	n/a	n/a
3	CEBPB	chr3:94680203-94681005	MCF-7	breast:	n/a	n/a
4	FOXA1	chr3:94680145-94681001	T-47D	breast:	n/a	n/a
5	SIN3AK20	chr3:94679901-94681088	MCF-7	breast:	n/a	n/a
6	GATA3	chr3:94680008-94681249	MCF-7	breast:	n/a	n/a
7	FOXM1	chr3:94680206-94680970	MCF-7	breast:	n/a	n/a
8	GATA3	chr3:94679969-94681150	MCF-7	breast:	n/a	n/a
9	EP300	chr3:94680135-94681101	MCF-7	breast:	n/a	n/a
10	EP300	chr3:94680190-94680760	T-47D	breast:	n/a	n/a
11	CEBPB	chr3:94680143-94681083	MCF-7	breast:	n/a	n/a
12	NR2F2	chr3:94680148-94681101	MCF-7	breast:	n/a	n/a
13	MAX	chr3:94680182-94680899	MCF-7	breast:	n/a	n/a
14	GATA3	chr3:94680147-94680979	MCF-7	breast:	n/a	n/a
15	HDAC2	chr3:94680171-94680958	MCF-7	breast:	n/a	n/a
16	FOXA1	chr3:94680233-94680960	T-47D	breast:	n/a	n/a
17	SIN3AK20	chr3:94680076-94681081	MCF-7	breast:	n/a	n/a
18	TCF12	chr3:94680110-94681141	MCF-7	breast:	n/a	n/a
19	TCF12	chr3:94680017-94681189	MCF-7	breast:	n/a	n/a
20	GATA3	chr3:94680053-94680958	T-47D	breast:	n/a	n/a
21	HDAC2	chr3:94680145-94681010	MCF-7	breast:	n/a	n/a
22	GATA3	chr3:94680003-94680943	T-47D	breast:	n/a	n/a
23	ZNF217	chr3:94680130-94680975	MCF-7	breast:	n/a	n/a
24	TEAD4	chr3:94680160-94680972	MCF-7	breast:	n/a	n/a

No data

Variant related genes	Relation type
LINC00879	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1017370	0.99[ASN][1000 genomes]
rs10804440	0.99[ASN][1000 genomes]
rs10804441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933818	0.90[ASN][1000 genomes]
rs1120672	0.99[ASN][1000 genomes]
rs1120673	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11706789	0.99[ASN][1000 genomes]
rs11710300	0.99[ASN][1000 genomes]
rs11718955	0.99[ASN][1000 genomes]
rs11719000	1.00[ASN][1000 genomes]
rs11720623	0.84[ASN][1000 genomes]
rs11918258	0.99[ASN][1000 genomes]
rs11919926	0.93[ASN][1000 genomes]
rs1368193	0.99[ASN][1000 genomes]
rs1432468	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432472	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1432473	0.99[ASN][1000 genomes]
rs1529652	0.99[ASN][1000 genomes]
rs1529653	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529654	0.99[ASN][1000 genomes]
rs1549860	0.94[ASN][1000 genomes]
rs1835872	1.00[ASN][1000 genomes]
rs1897461	0.99[ASN][1000 genomes]
rs1991752	0.93[ASN][1000 genomes]
rs1991753	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116610	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2116611	0.99[ASN][1000 genomes]
rs2370168	0.90[ASN][1000 genomes]
rs28588046	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs300090	0.90[ASN][1000 genomes]
rs300301	0.96[ASN][1000 genomes]
rs300305	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300306	0.96[ASN][1000 genomes]
rs380053	0.90[ASN][1000 genomes]
rs4857128	0.92[ASN][1000 genomes]
rs4857129	0.99[ASN][1000 genomes]
rs4857495	0.82[EUR][1000 genomes]
rs49698	0.96[ASN][1000 genomes]
rs6437515	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807717	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs728066	0.86[ASN][1000 genomes]
rs7622398	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7625912	0.94[ASN][1000 genomes]
rs7626615	0.94[ASN][1000 genomes]
rs7626749	0.99[ASN][1000 genomes]
rs7627012	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9809325	0.99[ASN][1000 genomes]
rs9822197	1.00[ASN][1000 genomes]
rs9822600	0.99[ASN][1000 genomes]
rs9857434	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9861234	0.99[ASN][1000 genomes]
rs9861368	0.87[ASN][1000 genomes]
rs9880324	0.99[ASN][1000 genomes]
rs991552	0.99[ASN][1000 genomes]
rs997528	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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