Variant report

Variant	rs2116610
Chromosome Location	chr3:94650718-94650719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94649439..94652058-chr3:94652973..94655338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242911	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1017370	0.93[ASN][1000 genomes]
rs10804440	0.93[ASN][1000 genomes]
rs10804441	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10933818	0.85[ASN][1000 genomes]
rs1120672	0.93[ASN][1000 genomes]
rs1120673	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11706789	0.93[ASN][1000 genomes]
rs11710300	0.93[ASN][1000 genomes]
rs11718955	0.93[ASN][1000 genomes]
rs11719000	0.94[ASN][1000 genomes]
rs11918258	0.93[ASN][1000 genomes]
rs11919926	0.99[ASN][1000 genomes]
rs1368193	0.93[ASN][1000 genomes]
rs1432468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1432469	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432472	0.88[EUR][1000 genomes]
rs1432473	0.93[ASN][1000 genomes]
rs1529652	0.93[ASN][1000 genomes]
rs1529653	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529654	0.93[ASN][1000 genomes]
rs1549860	0.98[ASN][1000 genomes]
rs1835872	0.94[ASN][1000 genomes]
rs1897461	0.93[ASN][1000 genomes]
rs1991752	0.99[ASN][1000 genomes]
rs1991753	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2116611	0.93[ASN][1000 genomes]
rs2370168	0.93[ASN][1000 genomes]
rs28588046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300090	0.96[ASN][1000 genomes]
rs300301	0.91[ASN][1000 genomes]
rs300305	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300306	0.90[ASN][1000 genomes]
rs380053	0.96[ASN][1000 genomes]
rs4857128	0.95[ASN][1000 genomes]
rs4857129	0.93[ASN][1000 genomes]
rs4857495	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs49698	0.91[ASN][1000 genomes]
rs6437515	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6807717	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs728066	0.81[ASN][1000 genomes]
rs7622398	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7625912	0.98[ASN][1000 genomes]
rs7626615	0.98[ASN][1000 genomes]
rs7626749	0.93[ASN][1000 genomes]
rs7627012	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809325	0.93[ASN][1000 genomes]
rs9822197	0.94[ASN][1000 genomes]
rs9822600	0.93[ASN][1000 genomes]
rs9857434	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9861234	0.93[ASN][1000 genomes]
rs9861368	0.82[ASN][1000 genomes]
rs9880324	0.93[ASN][1000 genomes]
rs991552	0.93[ASN][1000 genomes]
rs997528	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2443975	chr3:94646823-94651269	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links