Variant report

Variant	rs1432468
Chromosome Location	chr3:94668720-94668721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94654460..94657089-chr3:94668714..94671486,3	K562	blood:

Variant related genes	Relation type
ENSG00000234629	Chromatin interaction
ENSG00000239589	Chromatin interaction
ENSG00000242911	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1017370	0.94[ASN][1000 genomes]
rs10804440	0.94[ASN][1000 genomes]
rs10804441	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10933818	0.86[ASN][1000 genomes]
rs1120672	0.94[ASN][1000 genomes]
rs1120673	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11706789	0.94[ASN][1000 genomes]
rs11710300	0.94[ASN][1000 genomes]
rs11718955	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11719000	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11918258	0.94[ASN][1000 genomes]
rs11919926	0.95[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs1368193	0.94[ASN][1000 genomes]
rs1432469	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432472	0.85[EUR][1000 genomes]
rs1432473	0.94[ASN][1000 genomes]
rs1529652	0.94[ASN][1000 genomes]
rs1529653	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529654	0.94[ASN][1000 genomes]
rs1549860	0.99[ASN][1000 genomes]
rs1835872	0.95[ASN][1000 genomes]
rs1897461	0.94[ASN][1000 genomes]
rs1991752	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs1991753	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116610	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116611	0.94[ASN][1000 genomes]
rs2370168	0.94[ASN][1000 genomes]
rs28588046	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300090	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs300301	0.91[ASN][1000 genomes]
rs300305	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300306	0.91[ASN][1000 genomes]
rs380053	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs4857128	0.96[ASN][1000 genomes]
rs4857129	0.94[ASN][1000 genomes]
rs4857495	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs49698	0.91[ASN][1000 genomes]
rs6437515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807717	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728066	0.81[ASN][1000 genomes]
rs7622398	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625912	0.99[ASN][1000 genomes]
rs7626615	0.99[ASN][1000 genomes]
rs7626749	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7627012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9714169	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs9809325	0.94[ASN][1000 genomes]
rs9822197	0.95[ASN][1000 genomes]
rs9822600	0.94[ASN][1000 genomes]
rs9854077	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9857434	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9861234	0.94[ASN][1000 genomes]
rs9861368	0.82[ASN][1000 genomes]
rs9880324	0.94[ASN][1000 genomes]
rs991552	0.94[ASN][1000 genomes]
rs997528	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1432468	OR5K1	cis	parietal	SCAN
rs1432468	OR5K2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94666000-94669000	Weak transcription	Ovary	ovary

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