Variant report

Variant	rs9714169
Chromosome Location	chr3:94658656-94658657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11718955	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11719000	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap]
rs11919062	1.00[ASN][1000 genomes]
rs11919926	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11927923	1.00[ASN][1000 genomes]
rs1432467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432468	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1432470	1.00[ASN][1000 genomes]
rs16853213	1.00[ASN][1000 genomes]
rs1897462	1.00[ASN][1000 genomes]
rs1991752	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1991753	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs2217599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589479	1.00[ASN][1000 genomes]
rs300090	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs34490494	1.00[ASN][1000 genomes]
rs380053	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs441713	1.00[ASN][1000 genomes]
rs55873906	1.00[ASN][1000 genomes]
rs56976797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57467432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58255697	1.00[ASN][1000 genomes]
rs58384132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61005216	1.00[ASN][1000 genomes]
rs61562444	1.00[ASN][1000 genomes]
rs6437515	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73178292	1.00[ASN][1000 genomes]
rs73179469	1.00[ASN][1000 genomes]
rs73179470	1.00[ASN][1000 genomes]
rs73180219	1.00[ASN][1000 genomes]
rs73181203	1.00[ASN][1000 genomes]
rs73847083	1.00[ASN][1000 genomes]
rs73847087	1.00[ASN][1000 genomes]
rs7613024	1.00[ASN][1000 genomes]
rs7625700	1.00[ASN][1000 genomes]
rs7626749	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs7627012	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs7627497	1.00[ASN][1000 genomes]
rs7631481	1.00[ASN][1000 genomes]
rs7634570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647775	1.00[ASN][1000 genomes]
rs9811186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854077	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857434	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs9878881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9714169	OR5H6	cis	cerebellum	SCAN
rs9714169	DHFRL1	cis	cerebellum	SCAN
rs9714169	OR5K2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94657200-94665600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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