Variant report

Variant	rs28589479
Chromosome Location	chr3:94622235-94622236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11915767	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11919062	1.00[ASN][1000 genomes]
rs11919547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11925508	0.90[EUR][1000 genomes]
rs11927923	1.00[ASN][1000 genomes]
rs1432467	1.00[ASN][1000 genomes]
rs1432470	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853213	1.00[ASN][1000 genomes]
rs1897462	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217599	1.00[ASN][1000 genomes]
rs300077	0.94[EUR][1000 genomes]
rs34490494	1.00[ASN][1000 genomes]
rs441713	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55873906	1.00[ASN][1000 genomes]
rs56976797	1.00[ASN][1000 genomes]
rs57467432	1.00[ASN][1000 genomes]
rs58255697	1.00[ASN][1000 genomes]
rs58384132	1.00[ASN][1000 genomes]
rs61005216	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61562444	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804802	0.88[EUR][1000 genomes]
rs73178274	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73178277	0.88[EUR][1000 genomes]
rs73178279	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73178292	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179414	0.86[EUR][1000 genomes]
rs73179420	0.94[EUR][1000 genomes]
rs73179422	0.92[EUR][1000 genomes]
rs73179424	0.94[EUR][1000 genomes]
rs73179452	0.92[EUR][1000 genomes]
rs73179462	0.94[EUR][1000 genomes]
rs73179464	0.94[EUR][1000 genomes]
rs73179469	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179470	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179478	0.88[EUR][1000 genomes]
rs73179483	0.90[EUR][1000 genomes]
rs73179490	0.90[EUR][1000 genomes]
rs73179494	0.86[EUR][1000 genomes]
rs73179499	0.86[EUR][1000 genomes]
rs73180219	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181203	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181208	0.84[EUR][1000 genomes]
rs73181209	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73182103	0.86[EUR][1000 genomes]
rs73847061	0.94[EUR][1000 genomes]
rs73847083	1.00[ASN][1000 genomes]
rs73847087	1.00[ASN][1000 genomes]
rs7613024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625489	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7625700	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627497	1.00[ASN][1000 genomes]
rs7631481	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634570	1.00[ASN][1000 genomes]
rs7635954	0.94[EUR][1000 genomes]
rs7642941	1.00[ASN][1000 genomes]
rs7647775	1.00[ASN][1000 genomes]
rs9714169	1.00[ASN][1000 genomes]
rs9811186	1.00[ASN][1000 genomes]
rs9853438	1.00[ASN][1000 genomes]
rs9878881	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94620600-94622400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links