Variant report

Variant	rs7625489
Chromosome Location	chr3:94700071-94700072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94699653..94702017-chr8:143851251..143854146,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180155	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11915767	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11919547	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11925508	0.98[EUR][1000 genomes]
rs11927923	0.84[EUR][1000 genomes]
rs1432470	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16853213	0.84[EUR][1000 genomes]
rs1897462	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28589479	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs300077	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs441713	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61005216	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61562444	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6804802	0.96[EUR][1000 genomes]
rs73178274	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73178277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73178279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73178292	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73179414	0.85[EUR][1000 genomes]
rs73179420	0.94[EUR][1000 genomes]
rs73179422	0.92[EUR][1000 genomes]
rs73179424	0.94[EUR][1000 genomes]
rs73179452	0.92[EUR][1000 genomes]
rs73179462	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73179464	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73179469	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73179470	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73179478	0.96[EUR][1000 genomes]
rs73179483	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73179490	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73179494	0.94[EUR][1000 genomes]
rs73179499	0.94[EUR][1000 genomes]
rs73180219	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73181203	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73181208	0.96[EUR][1000 genomes]
rs73181209	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73182103	0.98[EUR][1000 genomes]
rs73847061	0.94[EUR][1000 genomes]
rs7613024	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7619245	0.81[EUR][1000 genomes]
rs7625700	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7631481	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7635954	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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