Variant report
| Variant | rs73181208 |
|---|---|
| Chromosome Location | chr3:94690192-94690193 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NSUN3-1 | chr3:94690115-94690198 | NR_015400 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11915767 | 0.90[EUR][1000 genomes] |
| rs11919547 | 0.94[EUR][1000 genomes] |
| rs11925508 | 0.94[EUR][1000 genomes] |
| rs1432470 | 0.88[EUR][1000 genomes] |
| rs1897462 | 0.88[EUR][1000 genomes] |
| rs28589479 | 0.84[EUR][1000 genomes] |
| rs300077 | 0.89[EUR][1000 genomes] |
| rs441713 | 0.84[EUR][1000 genomes] |
| rs61005216 | 0.90[EUR][1000 genomes] |
| rs61562444 | 0.90[EUR][1000 genomes] |
| rs6804802 | 0.96[EUR][1000 genomes] |
| rs73178274 | 0.96[EUR][1000 genomes] |
| rs73178277 | 0.96[EUR][1000 genomes] |
| rs73178279 | 0.96[EUR][1000 genomes] |
| rs73178292 | 0.90[EUR][1000 genomes] |
| rs73179414 | 0.81[EUR][1000 genomes] |
| rs73179420 | 0.89[EUR][1000 genomes] |
| rs73179422 | 0.87[EUR][1000 genomes] |
| rs73179424 | 0.89[EUR][1000 genomes] |
| rs73179452 | 0.91[EUR][1000 genomes] |
| rs73179462 | 0.89[EUR][1000 genomes] |
| rs73179464 | 0.89[EUR][1000 genomes] |
| rs73179469 | 0.90[EUR][1000 genomes] |
| rs73179470 | 0.90[EUR][1000 genomes] |
| rs73179478 | 0.96[EUR][1000 genomes] |
| rs73179483 | 0.94[EUR][1000 genomes] |
| rs73179490 | 0.94[EUR][1000 genomes] |
| rs73179494 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73179499 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73180219 | 0.90[EUR][1000 genomes] |
| rs73181203 | 0.88[EUR][1000 genomes] |
| rs73181209 | 0.96[EUR][1000 genomes] |
| rs73182103 | 0.98[EUR][1000 genomes] |
| rs73847061 | 0.89[EUR][1000 genomes] |
| rs7613024 | 0.84[EUR][1000 genomes] |
| rs7619245 | 0.81[EUR][1000 genomes] |
| rs7625489 | 0.96[EUR][1000 genomes] |
| rs7625700 | 0.90[EUR][1000 genomes] |
| rs7631481 | 0.84[EUR][1000 genomes] |
| rs7635954 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877169 | chr3:94675697-94840854 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:94686200-94690200 | Weak transcription | Fetal Heart | heart |
| 2 | chr3:94688200-94697000 | Weak transcription | Ovary | ovary |
