Variant report

Variant	rs73179424
Chromosome Location	chr3:94598271-94598272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11914374	0.85[EUR][1000 genomes]
rs11915767	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11919547	0.96[EUR][1000 genomes]
rs11925508	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1432470	0.90[EUR][1000 genomes]
rs1897462	0.90[EUR][1000 genomes]
rs28589479	0.94[EUR][1000 genomes]
rs300077	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs441713	0.94[EUR][1000 genomes]
rs61005216	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61562444	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66524820	0.85[EUR][1000 genomes]
rs6804802	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73177754	0.83[EUR][1000 genomes]
rs73177760	0.83[EUR][1000 genomes]
rs73178274	0.94[EUR][1000 genomes]
rs73178277	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73178279	0.94[EUR][1000 genomes]
rs73178292	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73179414	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73179420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73179452	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73179462	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179464	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179469	0.88[EUR][1000 genomes]
rs73179470	0.88[EUR][1000 genomes]
rs73179478	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73179483	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73179490	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73179494	0.91[EUR][1000 genomes]
rs73179499	0.91[EUR][1000 genomes]
rs73180219	0.88[EUR][1000 genomes]
rs73181203	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181208	0.89[EUR][1000 genomes]
rs73181209	0.94[EUR][1000 genomes]
rs73182103	0.91[EUR][1000 genomes]
rs73847061	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7613024	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7625489	0.94[EUR][1000 genomes]
rs7625700	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7631481	0.94[EUR][1000 genomes]
rs7635954	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649622	0.85[EUR][1000 genomes]
rs9872724	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877168	chr3:94430430-94614333	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94594200-94610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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